Personally, I would not count it. (Non-RMC) Wooden coasters usually get re-tracked often and if I counted each iteration as new credit, the list would be longer than it would need to be lol. More to the point, for rides that have have had significant changes (such as the removal of Son of Beast's loop, Mants' conversion into Rougarou or Recar turning forwards again), I would put a note next to the entry saying that I rode the coaster in both forms.
It's just my two cents; but, remember, the beauty of counting coaster credits is it's all subjective!